Dear all,
I have fitted a linear model to my data as follows: Var6 ~ 1 + groupVar1 +groupVar2 + groupVar3 +Var4 + Var5
the first 3 variables are dummy variables for the three groups that I have, and I aim to compare groups using GeneralizedLinearModel.fit and adjusting for nuisance variables. Using coefTest with this contrast I get the f statistic of "any group different from zero" while controlling for Var4 and Var5: [0 1 0 0 0 0;0 0 1 0 0 0;0 0 0 1 0 0] and I get a p value, and so on. However, when it comes to one tail t tests for the following two contrasts I get the same significant p value for which does not make sense to me:
contrast 2:Group1 >Group2 coefTest(m, [0 1 -1 0 0 0]) contrast 3:Group2 >Group1 coefTest (m, [0 -1 1 0 0 0])
It would be great if someone could let me know where I'm getting this wrong, as there is no way for a group to be greater and lesser than another group at the same time.
-Arman
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