I don't really get the question so I hope this is what you wanted. If you include a full document (such that we copy paste and see the problem on our systems) things are much more easier.
Here, you can change the default setting within a scope but your block
style had a node distance
which was resetting every time it is issued. I've made it 2mm such that we can see the difference easier.
\documentclass[tikz]{standalone}
\usetikzlibrary{arrows,shapes.geometric,positioning}
\begin{document}
\begin{tikzpicture}[decision/.style={diamond, draw, text width=4.5em, text badly centered, node distance=3.5cm, inner sep=0pt},
block/.style ={rectangle, draw, text width=6em, text centered, rounded corners, minimum height=4em, minimum height=2em},
cloud/.style ={draw, ellipse, minimum height=2em},
line/.style ={draw,-latex'},
node distance = 1cm,
auto]
\node [block] (1st) {1st};
\node [block, right= of 1st] (2nd1) {2nd1};
\begin{scope}[node distance=2mm and 10mm]%Here we change it for everything inside this scope
\node [block, above= of 2nd1] (2nd2) {2nd2};
\node [block, below= of 2nd1] (2nd3) {2nd3};
\node [block, right= of 2nd1] (3rd1) {3rd1};
\node [block, above= of 3rd1] (3rd2) {3rd2};
\node [block, above= of 3rd2] (3rd3) {3rd3};
\end{scope}
\node [block, below= of 3rd1] (3rd4) {3rd4};
\node [block, below= of 3rd4] (3rd5) {3rd5};
\path [line] (1st) -- (2nd1);
\path [line] (2nd1) -- (2nd2);
\path [line] (2nd1) -- (2nd3);
\path [line] (2nd2) -- (3rd3);
\path [line] (2nd1) -- (3rd1);
\path [line] (1st) -- (2nd1);
\end{tikzpicture}
\end{document}
The first thing to try is, of course, reducing the arrow lengths. If all else fails, use \mathclap
that, however, requires ampersand replacement
; or enclose the diagram in an lrbox
.
I'll show all three possibilities.
\documentclass[12pt,a4paper]{article}
\usepackage{mathtools}
\usepackage{tikz-cd}
\newsavebox{\wideeqbox}
\newcommand{\sample}{Lorem ipsum dolor sit amet, consectetur adipisicing elit, sed do eiusmod
tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud
exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor
in reprehenderit in voluptate.}
\begin{document}
\sample
\[
\mathclap{
\begin{tikzcd}[ampersand replacement=\&]
\bullet \dar \rar \&
\bullet \dar \rar \&
\bullet \dar \rar \&
\bullet \dar \rar \&
\bullet \dar \rar \&
\bullet \dar \rar \&
\bullet \dar \rar \&
\bullet \dar \rar \&
\bullet \dar \rar \&
\bullet \dar \\
\bullet \rar \&
\bullet \rar \&
\bullet \rar \&
\bullet \rar \&
\bullet \rar \&
\bullet \rar \&
\bullet \rar \&
\bullet \rar \&
\bullet \rar \&
\bullet
\end{tikzcd}
}
\]
\sample
\[
\begin{lrbox}{\wideeqbox}
$\begin{tikzcd}
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \\
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet
\end{tikzcd}$
\end{lrbox}
\makebox[0pt]{\usebox{\wideeqbox}}
\]
\sample
\[
\begin{tikzcd}[column sep=2em,row sep=1.5em]
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \rar &
\bullet \dar \\
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet \rar &
\bullet
\end{tikzcd}
\]
\sample
\end{document}
The lrbox
solution can be packaged into an environment:
\newsavebox{\wideeqbox}
\newenvironment{wideeq}
{\begin{displaymath}\begin{lrbox}{\wideeqbox}$\displaystyle}
{$\end{lrbox}\makebox[0pt]{\usebox{\wideeqbox}}\end{displaymath}}
Then
text
\begin{wideeq}
\begin{tikzcd}
...
\end{tikzcd}
\end{wideeq}
text
will do. Any math mode material can be used.
Best Answer
I suggest you create a dedicated macro called, say,
\tran
to act as the transpose operator. It's no problem to set it up in such a way that its height above the baseline is invariant to what characters may precede it.If you want to use the
\top
symbol to denote the transpose, I would suggest you reduce its size via a\scriptscriptstyle
directive.Depending on the math font family you use, you want to fine-tune the spacing adjustments made before and after the transpose symbol.
Addendum: If you wanted to (a) raise the transpose symbol a bit more relative to the example code above and (b) shift it a bit more to the left (so that it's closer to the symbol that precedes, you might use the following version of the
\tran
macro:Relative to the version shown in the MWE, the symbol is shifted
1mu
(equivalent to one third of a thin-space) more to the left, and it's also placed a bit higher up.