MATLAB: Hello, I have the following code and couldn’t figure out what I am doing wrong. I am getting the following error,

matrix dimension

%%Matrix dimensions must agree.
%Error in crop4 (line 86) ZTerm=Z.*ROI';
J=imread('3.bmp');
imshow(J)
set(gcf,'position',[1 1 600 600]);
% %binary img
% J=I(:,:,1)>160;
% imshow(J)
% set(gcf,'position',[1 1 600 600]);
%%Thining
% Ridge thining is to eliminate the redundant pixels of ridges till the 
% ridges are just one pixel wide.  
K=bwmorph(~J,'thin','inf');
imshow(~K)
set(gcf,'position',[1 1 600 600]);
%%Minutiae
% We filter the thinned ridge map by the filter "minutie". "minutie"
% compute the number of one-value of each 3x3 window:
% * if the central is 1 and has only 1 one-value neighbor, then the central 
% pixel is a termination.  
% * if the central is 1 and has 3 one-value neighbor, then the central 
% pixel is a bifurcation. 
% * if the central is 1 and has 2 one-value neighbor, then the central 
% pixel is a usual pixel. 
fun=@minutie;
L = nlfilter(K,[3 3],fun);
%%Termination
LTerm=(L==1);
imshow(LTerm)
LTermLab=bwlabel(LTerm);
propTerm=regionprops(LTermLab,'Centroid');
CentroidTerm=round(cat(1,propTerm(:).Centroid));
imshow(~K)
set(gcf,'position',[1 1 600 600]);
hold on
plot(CentroidTerm(:,1),CentroidTerm(:,2),'ro')
%%Bifurcation
LBif=(L==3);
LBifLab=bwlabel(LBif);
propBif=regionprops(LBifLab,'Centroid','Image');
CentroidBif=round(cat(1,propBif(:).Centroid));
plot(CentroidBif(:,1),CentroidBif(:,2),'go')
D=6;
%Process 1
Distance=DistEuclidian(CentroidBif,CentroidTerm);
SpuriousMinutae=Distance<D;
[i,j]=find(SpuriousMinutae);
CentroidBif(i,:)=[];
CentroidTerm(j,:)=[];
%Process 2
Distance=DistEuclidian(CentroidBif);
SpuriousMinutae=Distance<D;
[i,j]=find(SpuriousMinutae);
CentroidBif(i,:)=[];
%Process 3
Distance=DistEuclidian(CentroidTerm);
SpuriousMinutae=Distance<D;
[i,j]=find(SpuriousMinutae);
CentroidTerm(i,:)=[];
hold off
imshow(~K)
hold on
plot(CentroidTerm(:,1),CentroidTerm(:,2),'ro')
plot(CentroidBif(:,1),CentroidBif(:,2),'go')
hold off
%Suppress extrema minutiae
%Once we defined the ROI, we can suppress minutiae external to this ROI.
[m,n]=size(I(:,:,1));
indTerm=sub2ind([m,n],CentroidTerm(:,1),CentroidTerm(:,2));
Z=zeros(m,n);
Z(indTerm)=1;
ZTerm=Z.*ROI';
[CentroidTermX,CentroidTermY]=find(ZTerm);
indBif=sub2ind([m,n],CentroidBif(:,1),CentroidBif(:,2));
Z=zeros(m,n);
Z(indBif)=1;
ZBif=Z.*ROI';
[CentroidBifX,CentroidBifY]=find(ZBif);
imshow(I)
hold on
plot(CentroidTermX,CentroidTermY,'ro','linewidth',2)
plot(CentroidBifX,CentroidBifY,'go','linewidth',2)
Kopen=imclose(K,strel('square',7));
KopenClean= imfill(Kopen,'holes');
KopenClean=bwareaopen(KopenClean,5);
imshow(KopenClean)
KopenClean([1 end],:)=0;
KopenClean(:,[1 end])=0;
ROI=imerode(KopenClean,strel('disk',10));
imshow(ROI)
imshow(I)
hold on
imshow(ROI)
alpha(0.5)
hold on
plot(CentroidTerm(:,1),CentroidTerm(:,2),'ro')
plot(CentroidBif(:,1),CentroidBif(:,2),'go')
hold off
%orientation
Table=[3*pi/4 2*pi/3 pi/2 pi/3 pi/4
       5*pi/6 0 0 0 pi/6
       pi 0 0 0 0
      -5*pi/6 0 0 0 -pi/6
      -3*pi/4 -2*pi/3 -pi/2 -pi/3 -pi/4];
for ind=1:length(CentroidTermX)
    Klocal=K(CentroidTermY(ind)-2:CentroidTermY(ind)+2,CentroidTermX(ind)-2:CentroidTermX(ind)+2);
    Klocal(2:end-1,2:end-1)=0;
    [i,j]=find(Klocal);
    OrientationTerm(ind,1)=Table(i,j);
end
dxTerm=sin(OrientationTerm)*5;
dyTerm=cos(OrientationTerm)*5;
figure
imshow(K)
set(gcf,'position',[1 1 600 600]);
hold on
plot(CentroidTermX,CentroidTermY,'ro','linewidth',2)
plot([CentroidTermX CentroidTermX+dyTerm]',...
    [CentroidTermY CentroidTermY-dxTerm]','r','linewidth',2)
%%Bifurcation Orientation
% For each bifurcation, we have three lines. So we operate the same process than in termination case three times.
for ind=1:length(CentroidBifX)
    Klocal=K(CentroidBifY(ind)-2:CentroidBifY(ind)+2,CentroidBifX(ind)-2:CentroidBifX(ind)+2);
    Klocal(2:end-1,2:end-1)=0;
    [i,j]=find(Klocal);
    if length(i)~=3
        CentroidBifY(ind)=NaN;
        CentroidBifX(ind)=NaN;
        OrientationBif(ind)=NaN;
    else
        for k=1:3
            OrientationBif(ind,k)=Table(i(k),j(k));
            dxBif(ind,k)=sin(OrientationBif(ind,k))*5;
            dyBif(ind,k)=cos(OrientationBif(ind,k))*5;
          end
      end
  end
plot(CentroidBifX,CentroidBifY,'go','linewidth',2)
OrientationLinesX=[CentroidBifX CentroidBifX+dyBif(:,1);CentroidBifX CentroidBifX+dyBif(:,2);CentroidBifX CentroidBifX+dyBif(:,3)]';
OrientationLinesY=[CentroidBifY CentroidBifY-dxBif(:,1);CentroidBifY CentroidBifY-dxBif(:,2);CentroidBifY CentroidBifY-dxBif(:,3)]';
plot(OrientationLinesX,OrientationLinesY,'g','linewidth',2)
%Validation 
MinutiaTerm=[CentroidTermX,CentroidTermY,OrientationTerm];
MinutiaBif=[CentroidBifX,CentroidBifY,OrientationBif];
saveMinutia('John Doe',MinutiaTerm,MinutiaBif);

Best Answer

It is not possible to reach that line of code.
You have
[m,n]=size(I(:,:,1));
indTerm=sub2ind([m,n],CentroidTerm(:,1),CentroidTerm(:,2));
Z=zeros(m,n);
Z(indTerm)=1;
ZTerm=Z.*ROI';
but I is undefined, so it is not possible to reach the ZTerm line.
ROI is also undefined, so it would not be possible to execute the ZTerm line if you could get there.
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