After compiling my LaTeX document to PDF, I noticed that its internal bookmarks were using an incorrect hierarchy. Compare the bookmarks tree to the table of contents below:
How can this happen and how do I fix it? I never tinkered with the bookmarks system manually.
Here's a Minimal Working Example:
\documentclass[a4paper,oneside]{report}
\usepackage[a4paper]{geometry}
\usepackage[dutch,english]{babel}
\usepackage{subfigure}
\usepackage{graphicx}
\usepackage{lscape}
\usepackage[font={it,sf},labelfont=bf]{caption}
\usepackage[usenames,dvipsnames]{xcolor}
\usepackage[colorlinks=true,linkcolor=black,citecolor=red,urlcolor=red]{hyperref}
\title{AAA}
\author{AAA}
\date{AAA}
\begin{document}
\maketitle
\null
\vfill
\thispagestyle{empty}
\abstract
\chapter*{Introduction}
\addtolength{\parskip}{10px}
\setlength{\parindent}{0cm}
\pagenumbering{roman}
\newpage
\selectlanguage{english}
\addtolength{\parskip}{-10px}
\tableofcontents
\addtolength{\parskip}{10px}
\chapter{A}
\pagenumbering{arabic}
\section{AA}
\subsection{AAA}
\subsection{AAB}
\section{AB}
\section{AC}
\subsection{ACA}
\subsection{ACB}
\section{AD}
\newpage
\section{AE}
\chapter{B}
\section{BA}
\section{BB}
\subsection{BBA}
\section{BC}
\subsection{BCA}
\section{BD}
\subsection{BDA}
\subsection{BDB}
\subsection{BDC}
\section{BE}
\chapter{C}
\setcounter{chapter}{0}
\renewcommand{\thechapter}{\Alph{chapter}}
\chapter{D}
\selectlanguage{dutch}
\section{DA}
\subsection{DAA}
\subsection{DAB}
\subsection{DAC}
\subsection{DAD}
\subsection{DAE}
\subsection{DAF}
\subsection{DAG}
\newpage
\bibliographystyle{plain}
\end{document}
And here is the file list:
*File List*
report.cls 2007/10/19 v1.4h Standard LaTeX document class
size10.clo 2007/10/19 v1.4h Standard LaTeX file (size option)
geometry.sty 2010/09/12 v5.6 Page Geometry
keyval.sty 1999/03/16 v1.13 key=value parser (DPC)
ifpdf.sty 2011/01/30 v2.3 Provides the ifpdf switch (HO)
ifvtex.sty 2010/03/01 v1.5 Detect VTeX and its facilities (HO)
ifxetex.sty 2010/09/12 v0.6 Provides ifxetex conditional
geometry.cfg
babel.sty 2008/07/08 v3.8m The Babel package
bblopts.cfg 2006/07/31 v1.0 MiKTeX 'babel' configuration
dutch.ldf 2005/03/30 v3.8i Dutch support from the babel system
english.ldf 2005/03/30 v3.3o English support from the babel system
subfigure.sty 2002/07/30 v2.1.4 subfigure package
subfigure.cfg
graphicx.sty 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR)
graphics.sty 2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR)
trig.sty 1999/03/16 v1.09 sin cos tan (DPC)
graphics.cfg 2007/01/18 v1.5 graphics configuration of teTeX/TeXLive
pdftex.def 2011/05/27 v0.06d Graphics/color for pdfTeX
infwarerr.sty 2010/04/08 v1.3 Providing info/warning/error messages (HO)
ltxcmds.sty 2011/11/09 v1.22 LaTeX kernel commands for general use (HO)
lscape.sty 2000/10/22 v3.01 Landscape Pages (DPC)
caption.sty 2012/02/19 v3.2f Customizing captions (AR)
caption3.sty 2012/01/12 v1.4b caption3 kernel (AR)
xcolor.sty 2007/01/21 v2.11 LaTeX color extensions (UK)
color.cfg 2007/01/18 v1.5 color configuration of teTeX/TeXLive
dvipsnam.def 1999/02/16 v3.0i Driver-dependant file (DPC,SPQR)
hyperref.sty 2012/05/13 v6.82q Hypertext links for LaTeX
hobsub-hyperref.sty 2012/04/25 v1.12 Bundle oberdiek, subset hyperref (HO)
hobsub-generic.sty 2012/04/25 v1.12 Bundle oberdiek, subset generic (HO)
hobsub.sty 2012/04/25 v1.12 Construct package bundles (HO)
ifluatex.sty 2010/03/01 v1.3 Provides the ifluatex switch (HO)
intcalc.sty 2007/09/27 v1.1 Expandable calculations with integers (HO)
etexcmds.sty 2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
kvsetkeys.sty 2012/04/25 v1.16 Key value parser (HO)
kvdefinekeys.sty 2011/04/07 v1.3 Define keys (HO)
pdftexcmds.sty 2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO)
pdfescape.sty 2011/11/25 v1.13 Implements pdfTeX's escape features (HO)
bigintcalc.sty 2012/04/08 v1.3 Expandable calculations on big integers (HO)
bitset.sty 2011/01/30 v1.1 Handle bit-vector datatype (HO)
uniquecounter.sty 2011/01/30 v1.2 Provide unlimited unique counter (HO)
letltxmacro.sty 2010/09/02 v1.4 Let assignment for LaTeX macros (HO)
hopatch.sty 2011/06/24 v1.1 Wrapper for package hooks (HO)
xcolor-patch.sty 2011/01/30 xcolor patch
atveryend.sty 2011/06/30 v1.8 Hooks at the very end of document (HO)
atbegshi.sty 2011/10/05 v1.16 At begin shipout hook (HO)
refcount.sty 2011/10/16 v3.4 Data extraction from label references (HO)
hycolor.sty 2011/01/30 v1.7 Color options for hyperref/bookmark (HO)
kvoptions.sty 2011/06/30 v3.11 Key value format for package options (HO)
pd1enc.def 2012/05/13 v6.82q Hyperref: PDFDocEncoding definition (HO)
hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive
url.sty 2006/04/12 ver 3.3 Verb mode for urls, etc.
hpdftex.def 2012/05/13 v6.82q Hyperref driver for pdfTeX
rerunfilecheck.sty 2011/04/15 v1.7 Rerun checks for auxiliary files (HO)
supp-pdf.tex
nameref.sty 2010/04/30 v2.40 Cross-referencing by name of section
gettitlestring.sty 2010/12/03 v1.4 Cleanup title references (HO)
problem.out
problem.out
***********
It appears that these two lines are wreaking havoc:
\setcounter{chapter}{0}
\renewcommand{\thechapter}{\Alph{chapter}}
Best Answer
The package
hyperrefshould be loaded as last package. See:Which packages should be loaded after hyperref instead of before?
The package
subfigureis obsolete, instead usesubcaptionorsubfig.How to keep up with packages and know which ones are obsolete?
With the following header I have no problems:
EDIT
After you add your file list and was able to compare the versions of
hyperref.I am using:
and you are using:
You can see you need an update of your LaTeX distribution.
EDIT 2
Based on the new information the problems based on the setting of:
This isn't really unexpected. At this point
hyperreffinds every chapter twice and you get the warning:To solve this you must redefine
\theHchapterin a suitable way. Here a suggestion:An other hint: If you compile with XeLaTeX you can't work with the unit
px.I don't know why
Finally the complete example: