This happens because PGFPlots only uses one "stack" per axis: You're stacking the second confidence interval on top of the first. The easiest way to fix this is probably to use the approach described in "Is there an easy way of using line thickness as error indicator in a plot?": After plotting the first confidence interval, stack the upper bound on top again, using `stack dir=minus`

. That way, the stack will be reset to zero, and you can draw the second confidence interval in the same fashion as the first:

```
\documentclass{standalone}
\usepackage{pgfplots, tikz}
\usepackage{pgfplotstable}
\pgfplotstableread{
temps y_h y_h__inf y_h__sup y_f y_f__inf y_f__sup
1 0.237340 0.135170 0.339511 0.237653 0.135482 0.339823
2 0.561320 0.422007 0.700633 0.165871 0.026558 0.305184
3 0.694760 0.534205 0.855314 0.074856 -0.085698 0.235411
4 0.728306 0.560179 0.896432 0.003361 -0.164765 0.171487
5 0.711710 0.544944 0.878477 -0.044582 -0.211349 0.122184
6 0.671241 0.511191 0.831291 -0.073347 -0.233397 0.086703
7 0.621177 0.471219 0.771135 -0.088418 -0.238376 0.061540
8 0.569354 0.431826 0.706882 -0.094382 -0.231910 0.043146
9 0.519973 0.396571 0.643376 -0.094619 -0.218022 0.028783
10 0.475121 0.366990 0.583251 -0.091467 -0.199598 0.016664
}{\table}
\begin{document}
\begin{tikzpicture}
\begin{axis}
% y_h confidence interval
\addplot [stack plots=y, fill=none, draw=none, forget plot] table [x=temps, y=y_h__inf] {\table} \closedcycle;
\addplot [stack plots=y, fill=gray!50, opacity=0.4, draw opacity=0, area legend] table [x=temps, y expr=\thisrow{y_h__sup}-\thisrow{y_h__inf}] {\table} \closedcycle;
% subtract the upper bound so our stack is back at zero
\addplot [stack plots=y, stack dir=minus, forget plot, draw=none] table [x=temps, y=y_h__sup] {\table};
% y_f confidence interval
\addplot [stack plots=y, fill=none, draw=none, forget plot] table [x=temps, y=y_f__inf] {\table} \closedcycle;
\addplot [stack plots=y, fill=gray!50, opacity=0.4, draw opacity=0, area legend] table [x=temps, y expr=\thisrow{y_f__sup}-\thisrow{y_f__inf}] {\table} \closedcycle;
% the line plots (y_h and y_f)
\addplot [stack plots=false, very thick,smooth,blue] table [x=temps, y=y_h] {\table};
\addplot [stack plots=false, very thick,smooth,blue] table [x=temps, y=y_f] {\table};
\end{axis}
\end{tikzpicture}
\end{document}
```

You need an extra coordinates for each `addplot`

, since `ybar interval=0.8`

is used; therefore 8 coordinates only generates 7 `ybar`

because an interval is defined by two coordinates. The last coordinate will only be used to determine the interval width; its y value doesn't change the bar appearance. Here (65536,0.1) is appended as a dummy coordinate to serve as the horizontal end point. Since the OP did not provide `\Dshadowbox`

, it is therefore disable to make a run.

As a side note, if `ybar interval=0.8`

is removed, (that is no ybar interval plot) then the last coordinate (32768,y) will show.

Code

```
\documentclass[border=2cm]{standalone}
\usepackage{graphicx}
\usepackage{pgfplots}
\pgfplotsset{compat=1.8}
\begin{document}
%\begin{figure}[htbp]
%\centering
%\Dshadowbox{
\begin{tikzpicture}[scale=1]
\begin{axis}[
x tick label style={
/pgf/number format/1000 sep=},
ylabel=\textbf{Computation Time} $\mathbf{s}$,
xlabel=\textbf{Signal Length $\mathbf{N}$},
xtick=data,
symbolic x coords = {256,512,1024,2048,4096,8192,16384,32768,65536},
ybar interval=0.8,
xtick={256,512,1024,2048,4096,8192,16384,32768,65536},
bar width = 10pt,
ymode=log,
bar shift=0pt,
log origin=infty,
width=\textwidth
]
\addplot
coordinates {(256,0.0202) (512,0.0445)
(1024,0.1578) (2048,0.5877) (4096,3.5797) (8192,18.8230) (16384,103.7727) (32768,762.0937)(65536,0.1)};
\addplot
coordinates {(256,0.0012) (512,0.0034)
(1024,0.0106) (2048,0.0229) (4096,0.1045) (8192,0.4693) (16384,3.0236) (32768,22.8810)(65536,0.1)};
\addplot
coordinates {(256,0.0009) (512,0.0013)
(1024,0.0027) (2048,0.0059) (4096,0.220) (8192,0.0858) (16384,0.3697) (32768,3.7458)(65536,0.1)};
\addplot
coordinates {(256,0.0028) (512,0.0032)
(1024,0.0052) (2048,0.0168) (4096,0.0638) (8192,0.2927) (16384,1.4904) (32768,9.21)(65536,0.1)};
\addplot
coordinates {(256,0.0011) (512,0.0019)
(1024,0.0085) (2048,0.0486) (4096,0.1973) (8192,0.6917) (16384,3.2107) (32768,17.1235)(65536,0.1)};
\addplot
coordinates {(256,0.00006) (512,0.00014)
(1024,0.00022) (2048,0.00047) (4096,0.0019) (8192,0.0085) (16384,0.3123) (32768,5.9074)(65536,0.1)};
\end{axis}
\end{tikzpicture}
%}
%\end{figure}
\end{document}
```

## Best Answer

LaTeX has a safe percent macro but it uses an

`@`

name so first give it a name without an`@`

.