How can I got the polyfit function to deal with the NAN values to give me the correct polyfit?
You cannot. You need to be sure not to pass in data that contains nan.
mask = ~(isnan(T3_All) | isnan(Tmax_All));
coeff1 = polyfit(T3_All(mask), Tmax_All(mask), 1);
Best Answer
You would recognize it is a mask, if your professor doesn't like it, ask why, because the mo mask solution is slower and less visible.