MATLAB: Shell command on matlab command line shows error

dylib shell batch script

Hi All,
I am using student version of Matlab on Mac OS
I am trying to execute a batch file (modflow.bat) in matlab
------------------------
cat basic.bas > picto12_15.bas
tail -13098 picto09_12.fhd >> picto12_15.bas
~/modflow/src/mf2005 picto12_15.nam > chick
cat basic.bas > picto15_18.bas
tail -13098 picto12_15.fhd >> picto15_18.bas
~/modflow/src/mf2005 picto15_18.nam > chick
cat basic.bas > picto18_21.bas
tail -13098 picto15_18.fhd >> picto18_21.bas
~/modflow/src/mf2005 picto18_21.nam > chick
cat basic.bas > picto21_24.bas
tail -13098 picto18_21.fhd >> picto21_24.bas
~/modflow/src/mf2005 picto21_24.nam > chick
------------------------
this batch file runs fine on the command line of mac. but when I did
!sh modflow.bat
it gives the error
dyld: lazy symbol binding failed: Symbol not found:
__gfortran_transfer_character_write
 Referenced from: /Users/ashutoshsingh/modflow/src/mf2005
 Expected in: /Applications/MATLAB_R2011a.app/sys/os/maci64/
libgfortran.3.dylib
dyld: Symbol not found: __gfortran_transfer_character_write
 Referenced from: /Users/ashutoshsingh/modflow/src/mf2005
 Expected in: /Applications/MATLAB_R2011a.app/sys/os/maci64/
libgfortran.3.dylib
modflow.bat: line 3:  8527 Trace/BPT trap          ~/modflow/src/
mf2005 picto12_15.nam > chick
dyld: lazy symbol binding failed: Symbol not found:
__gfortran_transfer_character_write
 Referenced from: /Users/ashutoshsingh/modflow/src/mf2005
 Expected in: /Applications/MATLAB_R2011a.app/sys/os/maci64/
libgfortran.3.dylib
dyld: Symbol not found: __gfortran_transfer_character_write
 Referenced from: /Users/ashutoshsingh/modflow/src/mf2005
 Expected in: /Applications/MATLAB_R2011a.app/sys/os/maci64/
libgfortran.3.dylib
modflow.bat: line 6:  8532 Trace/BPT trap          ~/modflow/src/
mf2005 picto15_18.nam > chick
dyld: lazy symbol binding failed: Symbol not found:
__gfortran_transfer_character_write
 Referenced from: /Users/ashutoshsingh/modflow/src/mf2005
 Expected in: /Applications/MATLAB_R2011a.app/sys/os/maci64/
libgfortran.3.dylib
dyld: Symbol not found: __gfortran_transfer_character_write
 Referenced from: /Users/ashutoshsingh/modflow/src/mf2005
 Expected in: /Applications/MATLAB_R2011a.app/sys/os/maci64/
libgfortran.3.dylib
modflow.bat: line 9:  8535 Trace/BPT trap          ~/modflow/src/
mf2005 picto18_21.nam > chick
dyld: lazy symbol binding failed: Symbol not found:
__gfortran_transfer_character_write
 Referenced from: /Users/ashutoshsingh/modflow/src/mf2005
 Expected in: /Applications/MATLAB_R2011a.app/sys/os/maci64/
libgfortran.3.dylib
dyld: Symbol not found: __gfortran_transfer_character_write
 Referenced from: /Users/ashutoshsingh/modflow/src/mf2005
 Expected in: /Applications/MATLAB_R2011a.app/sys/os/maci64/
libgfortran.3.dylib
modflow.bat: line 12:  8538 Trace/BPT trap          ~/modflow/src/
mf2005 picto21_24.nam > chick
sh modflow.bat: Trace/breakpoint trap
————————————————–
Can anyone tell me where is the problem
Thanking You and Regards
Ashutosh Singh

Best Answer

Hi,
The problem was with the env variable DYLD_LIBRARY_PATH I used the following command to setup the env variable in matlab and now it works fine.
setenv('DYLD_LIBRARY_PATH', '/usr/local/bin/');
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