I am seeing lots of warnings and java errors while opening Matlab 2013b,
Warning: Function license has the same name as a MATLAB builtin. We suggest you rename the function to avoid a potential name conflict.Warning: Function version has the same name as a MATLAB builtin. We suggest you rename the function to avoid a potential name conflict.Warning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\coder_foundation\tflWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\c166\c166Warning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\c166\c166demosWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\mpc555dkWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\mpc555dk\common\configurationWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\mpc555dk\mpc555demosWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\mpc555dk\mpc555dkWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\mpc555dk\pilWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\mpc555dk\rt\blocksetWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\mpc555dk\rt\blockset\mfilesWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\tasking\taskingWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rtw\targets\tasking\taskingdemosWarning: Name is nonexistent or not a directory: D:\matlab2013\help\toolbox\vision\examplesWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\daq\daqblks\daqblksWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\daq\daqblks\daqmasksWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\daq\daqblks\daqmexWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\embeddedcoderWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\adivdsp\mdlinfoWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\adivdsp\rtwWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\adivdsp\tflWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\adivdsp\vdspblksWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\adivdsp\vdspdemosWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\ghsmultiWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\ghsmulti\mdlinfoWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\ghsmulti\multiblksWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\ghsmulti\multidemosWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\ghsmulti\rtwWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\ghsmulti\tflWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\wrworkbenchWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\wrworkbench\mdlinfoWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\wrworkbench\registryWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\extensions\wrworkbench\wrworkbenchblksWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\foundation\lfsocket\lfsocketWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\foundation\pjtgenerator\blks\utilsWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\idelink\foundation\pjtgenerator\hookpointsWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\instrument\instrumentWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\instrument\instrumentblks\instrumentblksWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\instrument\instrumentblks\instrumentmasksWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\instrument\instrumentblks\instrumentmexWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\instrument\instrumentdemosWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\physmod\data_manager\data_managerWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\physmod\foundation\foundationWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\physmod\gl\core\mWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\physmod\gl\sli\mWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\physmod\logging\base\mWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\physmod\logging\mli\mWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\physmod\pmir\pmirWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\physmod\simscape_language\simscape_languageWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\physmod\simulation\base\mWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\physmod\unit_manager\unit_managerWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\rf\openifWarning: Name is nonexistent or not a directory: D:\matlab2013\toolbox\sam\m3iWarning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\shared\eml\eml Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\shared\statslib Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\simrf\simrfdemos Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\simrf\simrfmasks Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\slvnv\do178b Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\slvnv\iec61508 Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\slvnv\rmidemos Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\slvnv\simcovdemos Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\slvnv\slvnvdemos Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\slvnv\styleguide Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\stats\classreg Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\stats\stats Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\stats\statsdemos Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\symbolic\symbolic Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\symbolic\symbolicdemos Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\operatingsystem\vxworks\blks Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\operatingsystem\vxworks\blks\masks Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\operatingsystem\vxworks\blks\mex Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\operatingsystem\vxworks\src Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\processor\blackfin Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\processor\blackfin\blackfindemos Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\processor\blackfin\blks Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\processor\blackfin\blks\masks Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\processor\blackfin\blks\mex Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\processor\tic2000\blks\masks Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\target\extensions\processor\tic2000\tic2000demos Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\vision\vision Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\vision\visiondemos Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\vision\visionutilities Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\vision\visionutilities\visioninit Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\vision\visionutilities\visionmex Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\wavelet\compression Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\wavelet\wavedemo Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\wavelet\wavelet Warning: Name is nonexistent or not a directory:D:\matlab2013\toolbox\wavelet\wmultisig1d Warning: Name is nonexistent or not a directory:D:\lpaa-smartamp\rdgui\cfg\tas2555 Warning: Name is nonexistent or not a directory:D:\lpaa-smartamp\rdgui\cfg\tas2557 Warning: Name is nonexistent or not a directory:D:\lpaa-smartamp\rdgui\cfg\tas2557_revB2\outputControls ERROR: Error starting reference:file:/D:/matlab2013/java/jar/cmlink/implementations/svnintegration.jar (org.osgi.framework.BundleException: Activator start error in bundle com.mathworks.cmlink [8].)java.lang.NoClassDefFoundError: com/mathworks/toolbox/shared/computils/reflection/Caller at com.mathworks.cmlink.util.adapter.wrappers.CMAdapterFactoryWrapper.<init>(CMAdapterFactoryWrapper.java:16) at com.mathworks.cmlink.implementations.svnintegration.CmdLineSVNAdapterFactory.<init>(CmdLineSVNAdapterFactory.java:10) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) at java.lang.reflect.Constructor.newInstance(Unknown Source) at java.lang.Class.newInstance0(Unknown Source) at java.lang.Class.newInstance(Unknown Source) at com.mathworks.util.osgi.ServicesActivator.registerServicePair(ServicesActivator.java:58) at com.mathworks.util.osgi.ServicesActivator.parseServices(ServicesActivator.java:38) at com.mathworks.util.osgi.ServicesActivator.start(ServicesActivator.java:33) at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:589) at org.apache.felix.framework.Felix.startBundle(Felix.java:1458) at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:984) at org.apache.felix.framework.StartLevelImpl.run(StartLevelImpl.java:263) at java.lang.Thread.run(Unknown Source)Caused by: java.lang.ClassNotFoundException: com.mathworks.toolbox.shared.computils.reflection.Caller at java.net.URLClassLoader$1.run(Unknown Source) at java.net.URLClassLoader$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown Source) at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown Source) ... 16 moreException in thread "ContributedToolsLoader" java.lang.NoClassDefFoundError: com/mathworks/appmanagement/AppManagementApiBuilder at com.mathworks.mde.desk.ContributedTools.<init>(ContributedTools.java:104) at com.mathworks.mde.desk.ContributedToolsLoader$1.run(ContributedToolsLoader.java:18) at java.lang.Thread.run(Unknown Source)Caused by: java.lang.ClassNotFoundException: com.mathworks.appmanagement.AppManagementApiBuilder at java.net.URLClassLoader$1.run(Unknown Source) at java.net.URLClassLoader$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown Source) at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown Source) ... 3 moreException in thread "Startup Class Loader" java.lang.NoClassDefFoundError: com/jniwrapper/PlatformContext at com.teamdev.jxbrowser.mozilla.MozillaBrowserType.isSupported(Unknown Source) at com.mathworks.html.jxbrowser.JxBrowserSettings.getBrowserTypeValues(JxBrowserSettings.java:46) at com.mathworks.html.jxbrowser.JxBrowserSettings.buildSupportedProperties(JxBrowserSettings.java:33) at com.mathworks.html.jxbrowser.JxBrowserSettings.<clinit>(JxBrowserSettings.java:23) at com.mathworks.html.BrowserSettings.getAllSettingsInstances(BrowserSettings.java:59) at com.mathworks.html.BrowserSettings.<clinit>(BrowserSettings.java:22) at com.mathworks.mlwidgets.html.HtmlComponentFactory.<clinit>(HtmlComponentFactory.java:54) at java.lang.Class.forName0(Native Method) at java.lang.Class.forName(Unknown Source) at com.mathworks.mde.desk.StartupClassLoader$LoadInfo.<init>(StartupClassLoader.java:80) at com.mathworks.mde.desk.StartupClassLoader.createLoadInfos(StartupClassLoader.java:161) at com.mathworks.mde.desk.StartupClassLoader.access$400(StartupClassLoader.java:25) at com.mathworks.mde.desk.StartupClassLoader$2.run(StartupClassLoader.java:178) at java.lang.Thread.run(Unknown Source)Caused by: java.lang.ClassNotFoundException: com.jniwrapper.PlatformContext at java.net.URLClassLoader$1.run(Unknown Source) at java.net.URLClassLoader$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown Source) at sun.misc.Launcher$AppClassLoader.loadClass(Unknown Source) at java.lang.ClassLoader.loadClass(Unknown Source) ... 14 moreInterestingly, I get Java errors (below) if I click Preferences button too, then Preferences panel opens but the window is empty and doesn't show any options.
Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: com.mathworks.appmanagement.AppsPreferencePanel no class matches the supplied argument at com.mathworks.mlwidgets.prefs.PrefsDialog.getPrefsEditorPanelFactory(PrefsDialog.java:397) at com.mathworks.mlwidgets.prefs.PrefsDialog.registerPanel(PrefsDialog.java:358) at com.mathworks.mlwidgets.prefs.PrefsDialogRegistrar.preRegisterPanels(PrefsDialogRegistrar.java:47) at com.mathworks.mlwidgets.prefs.PrefsDialog.initialize(PrefsDialog.java:101) at com.mathworks.mlwidgets.prefs.PrefsDialog.access$500(PrefsDialog.java:32) at com.mathworks.mlwidgets.prefs.PrefsDialog$4.run(PrefsDialog.java:277) at com.mathworks.mlwidgets.prefs.PrefsDialog.showPrefsDialog(PrefsDialog.java:291) at com.mathworks.mlwidgets.prefs.PrefsDialog.doShowPrefsDialog(PrefsDialog.java:251) at com.mathworks.mlwidgets.prefs.PrefsDialog.showPrefsDialog(PrefsDialog.java:127) at com.mathworks.mlwidgets.prefs.PrefsDialog.showLastPrefsDialog(PrefsDialog.java:164) at com.mathworks.mlservices.MLPrefsDialogServices.showLastPrefsDialog(MLPrefsDialogServices.java:45) at com.mathworks.mde.desk.MLDesktop$PreferencesAction.actionPerformed(MLDesktop.java:2651) at com.mathworks.mwswing.ChildAction.actionPerformed(ChildAction.java:214) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.setPressed(Unknown Source) at com.mathworks.toolstrip.plaf.RegularButtonUI$RegularToolstripButtonListener.mouseReleasedImpl(RegularButtonUI.java:327) at com.mathworks.toolstrip.plaf.RegularButtonUI$RegularToolstripButtonListener.mouseReleased(RegularButtonUI.java:321) at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at com.mathworks.mwswing.MJButton.processMouseEvent(MJButton.java:348) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$200(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.awt.EventQueue$3.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.awt.EventQueue$4.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.ProtectionDomain$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source)Any help is appreciated.
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