Currently, you can specify only one colormap per figure. Therefore, to display more than one plot in a figure with separate colorbars, you can concatenate two colormaps and then set the 'CLim' property of each axes so that the two subplots map into different portions of the colormap.
For an example of how this is done, please refer to the following documentation:
<http://www.mathworks.com/help/matlab/creating_plots/axes-color-limits--the-clim-property.html>
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