MATLAB: How to output reaction rates for each time step in Simbiology

Question

Hi all,

I would like to see the calculated rates between species for each time step. Simbiology doesn't seem to have a function/option to do that (Please correct me if I'm wrong!). How can I get to my rates anyway?

Thanks, Frank

Answer 1

Thank you for your suggestions. They are definitely a good way to get one or two rates out of rather small models that do not have too many reactions pulling and pushing on one species.

I looked a little deeper into that problem and came up with a quick-'n'-dirty solution of my own. The function rateout.m records all reaction rates over time and exports the result into Matlab's workspace. Detailed instructions are in the file, which is now available in Matlab's File Central at:

http://www.mathworks.com/matlabcentral/fileexchange/32961