MATLAB: Crop the base image from the mask

crop the base image

hi, I have a base image and a mask image (both are 3d medical Images)in .mhd format.I have the code to read my image in the above format. Can anyone provide me help in cropping my base image with the mask.
Thanks

Best Answer

To crop, you can calculate the top, bottom, left, and right columns of the mask's "true" area by using any(). Then use
croppedImage = fullImage(row1:row2, col1:col2);
or you can use imcrop().