This enhancement has been incorporated in Release 2010a (R2010a). For previous product releases, read below for any possible workarounds:
For MATLAB 7.10 (R2010a) onwards you can change this setting using the preferences dialog box. For more information, refer to the documentation page on 'Java Heap Memory Preferences'. This can be accessed as follows:
1. Open the help browser by typing at the MATLAB Command Prompt:
2. Search for 'Java Heap Memory Preferences' on the search bar of this documentation browser.
For previous releases please see the instructions given below as to how the Java heap space memory can be increased.
As of MATLAB 6.0 (R12), you can increase the heap space for the Java Virtual machine (VM) by using the following file:
1. Create java.opts file:
Create a text file named java.opts in the $MATLABROOT/bin/$ARCH directory. $MATLABROOT is the MATLAB root directory and $ARCH is your system architecture, which you find by typing at the MATLAB Command Prompt:
matlabroot
computer('arch')
If you do not have write-access to $MATLABROOT/bin/$ARCH, or if you want a user-specific version, create the java.opts file in the MATLAB startup directory. The MATLAB startup directory can be found by executing the following at the MATLAB Command Prompt (before any MATLAB code is executed):
If you use MATLAB 7.7 (R2008b) or later versions on a MAC OS system, MATLAB default installation directory is
/Applications/MATLAB_<Release>.app
where <Release> is the MATLAB Release's version, i.e., R2008b, R2009a, etc. To access the contents of the /Applications/MATLAB_<Release>.app directory, in Finder, navigate to Applications and right-click on MATLAB_<Release>.app. Click 'Show Package Contents' and you will be able to see the contents of the directory.
2. Determine the version of the Java Virtual Machine (JVM) in use:
The contents of java.opts depend on your version of the JVM. To determine the version of the JVM you are running, type the following at the MATLAB Command Prompt:
3. Determine the value to put in the java.opts file:
When MATLAB is launched, it starts up the Java Runtime Environment. MATLAB uses a set of default values for the initial and maximum heap size (managed by the heap manager). When the free memory nears zero, Java will dynamically increase the heap size (up to the Max Heap Size setting). The following table shows the default settings MATLAB uses for versions of the JVM:
JVM Initial Heap Size Max Heap Size
1.6.0 -Xms64m -Xmx128m (32-bit)
-Xmx196m (64-bit)
1.5.0 -Xms64m -Xmx96m (32-bit)
-Xmx128m (64-bit)
1.4.2 -Xms16m -Xmx96m
1.3.1 -Xms16000000 -Xmx64000000
1.2.2 -Xms16000000 -Xmx64000000
1.1.8 -ms16000000 -mx64000000
You can use the following commands to obtain information about the Java heap space usage in MATLAB:
java.lang.Runtime.getRuntime.maxMemory
java.lang.Runtime.getRuntime.totalMemory
java.lang.Runtime.getRuntime.freeMemory
Users can override these values by setting them manually in a java.opts file. For example, including the following line in a java.opts file sets the Max Heap Size value to 256 MB:
For JVM of 1.2.2 and later, place the following in your java.opts file:
For JVM 1.1.8 'java.opts', place the following in your java.opts file:
This will give you 256MB of JVM memory and you can adjust the parameter as needed. Remember that increasing the size of the Java heap may correspondingly decrease the amount of space available for MATLAB arrays. For more information, refer the following guide on Memory Management: http://www.mathworks.com/support/tech-notes/1100/1106.html 4. Troubleshooting:
If you are increasing the Java heap size in response to an "OutOfMemoryError: Java heap space", and you get the same error with the larger heap, you may have a memory leak, or you may be retaining references to Java objects beyond their usefulness. The Java SE Troubleshooting guide may help isolate the problem: http://java.sun.com/javase/6/webnotes/trouble/ 
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