QGIS 2.12 has support for saving a layer on the map in the GeoPackage format and that is great. However, I don't see a way to add another layer to the GPKG file, even though GeoPackage supports multiple layers. Is this functionality that is yet to come in QGIS or is there a way to do it with QGIS 2.12?
[GIS] How to add another layer to GeoPackage in QGIS
geopackageqgis
Best Answer
I'm seeing this years later, but if someone still wonders...
In addition to the "save as" method, with QGIS 3.0, you can click and drag layers inside a GeoPackage within the Browser panel.