Let me try to summarize what I gathered from your question and from your comments:
you have some 3d visualization which requires lots of time.
"lots of" means 1000+ data points. This corresponds to a resolution of ~ 30x30
you are wondering how to improve speed; and scatter plots appeared to be a solution.
First, concerning (3.): if you need scatter plots, there is not much choice, I guess. But if you really have the choice, you should stick with surf, shader=interp
. This surface plot handler can be processed efficiently by pgfplots; it is much faster than scatter plots and it results in a smaller pdf.
And: if you have a relatively smooth function, it requires few data points.
Concerning the need to improve compilation times: I think there are three choices:
choice 1: the external
library. Write
\usetikzlibrary{external}
\tikzexternalize
into your preamble; then compile with pdflatex -shell-escape
. This allows automatic export of individual pictures to pdf, with sophisticated logic to preserve scaling, alignment, bounding boxes, labels, etc. You can find lots of instructions in the manual or on this site.
choice 2: the standalone package can also be used. Details in the manual or on this site.
choice 3: if even the compilation of these external pdfs takes too long, you can consider reducing the sampling resolution. Perhaps this is feasible.
If the quality degenerates but you know that you surface is smooth, you could even resort to the patchplots
lib of pgfplots and use some higher-order shader (patch type=bilinear
or patch type=biquadratic
or patch type
=bicubiccombined with
shader=interp). Except for
patch type=bilinear, these patches require changes to your sampling routine (i.e. the expected input changes). See also
patch type sampling` in pgfplots 1.7.
choice 4: you can resort to \addplot graphics
. The \addplot graphics
switch, however, should be regarded as last hope as it involves more manual work (tuning axis limits) than desired and involves 3rd party tools (more overhead).
This happens because PGFPlots only uses one "stack" per axis: You're stacking the second confidence interval on top of the first. The easiest way to fix this is probably to use the approach described in "Is there an easy way of using line thickness as error indicator in a plot?": After plotting the first confidence interval, stack the upper bound on top again, using stack dir=minus
. That way, the stack will be reset to zero, and you can draw the second confidence interval in the same fashion as the first:
\documentclass{standalone}
\usepackage{pgfplots, tikz}
\usepackage{pgfplotstable}
\pgfplotstableread{
temps y_h y_h__inf y_h__sup y_f y_f__inf y_f__sup
1 0.237340 0.135170 0.339511 0.237653 0.135482 0.339823
2 0.561320 0.422007 0.700633 0.165871 0.026558 0.305184
3 0.694760 0.534205 0.855314 0.074856 -0.085698 0.235411
4 0.728306 0.560179 0.896432 0.003361 -0.164765 0.171487
5 0.711710 0.544944 0.878477 -0.044582 -0.211349 0.122184
6 0.671241 0.511191 0.831291 -0.073347 -0.233397 0.086703
7 0.621177 0.471219 0.771135 -0.088418 -0.238376 0.061540
8 0.569354 0.431826 0.706882 -0.094382 -0.231910 0.043146
9 0.519973 0.396571 0.643376 -0.094619 -0.218022 0.028783
10 0.475121 0.366990 0.583251 -0.091467 -0.199598 0.016664
}{\table}
\begin{document}
\begin{tikzpicture}
\begin{axis}
% y_h confidence interval
\addplot [stack plots=y, fill=none, draw=none, forget plot] table [x=temps, y=y_h__inf] {\table} \closedcycle;
\addplot [stack plots=y, fill=gray!50, opacity=0.4, draw opacity=0, area legend] table [x=temps, y expr=\thisrow{y_h__sup}-\thisrow{y_h__inf}] {\table} \closedcycle;
% subtract the upper bound so our stack is back at zero
\addplot [stack plots=y, stack dir=minus, forget plot, draw=none] table [x=temps, y=y_h__sup] {\table};
% y_f confidence interval
\addplot [stack plots=y, fill=none, draw=none, forget plot] table [x=temps, y=y_f__inf] {\table} \closedcycle;
\addplot [stack plots=y, fill=gray!50, opacity=0.4, draw opacity=0, area legend] table [x=temps, y expr=\thisrow{y_f__sup}-\thisrow{y_f__inf}] {\table} \closedcycle;
% the line plots (y_h and y_f)
\addplot [stack plots=false, very thick,smooth,blue] table [x=temps, y=y_h] {\table};
\addplot [stack plots=false, very thick,smooth,blue] table [x=temps, y=y_f] {\table};
\end{axis}
\end{tikzpicture}
\end{document}
Best Answer
Simply add "value".